Sourced from http://biorxiv.org/content/early/2016/08/15/069682.
Yi-Fei Huang, Brad Gulko, Adam Siepel
Review posted on 10th October 2016
Very nice paper. A few questions and clarifications.
1. Whats the negative set you used in the TFBS prediction evaluation (supp. fig 2). Its not clear from reading the methods.
See full review here.