preprint reviews by Anshul Kundaje

Base-pair resolution detection of transcription factor binding site by deep deconvolutional network

Sourced from https://www.biorxiv.org/content/early/2018/01/26/254508.

Sirajul Salekin, Jianqiu , Yufei Huang

Review posted on 02nd February 2018

Nice work. But I have a few questions and comments.

...

See full review here.


gkm-DNN: efficient prediction using gapped k-mer features and deep neural networks

Sourced from http://www.biorxiv.org/content/early/2017/07/31/170761.

Zhen Cao, Shihua Zhang

Review posted on 31st July 2017

This is an interesting fusion of kernel methods and DNNs.

However, I have a few issues with the results and some suggestions for improvement. Hopefully you find them useful.

1. Reportin...

See full review here.