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Preprint Authors Area Date Reviews
16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model R. Luo ... S. Salzberg Bioinformatics Mar 2017 R1
Predicting the phenotype of Mendelian disease missense mutations using amino acid conservation and protein stability change M. T. Chavez, E. O. Perlstein, Bioinformatics Jan 2017 R1
Portable and Error-Free DNA-Based Data Storage S. M. H. T. Yazdi ... O. Milenkovic Bioinformatics Oct 2016 R1
Transformation and model choice for RNA-seq co-expression analysis A. Rau, C. Maugis-Rabusseau, Bioinformatics Jul 2016 R1
sCNAphase: using haplotype resolved read depth to genotype somatic copy number alterations from low cellularity aneuploid tumors W. Chen ... L. Coin Bioinformatics Jul 2016 R1, R2
Scaffolding and Completing Genome Assemblies in Real-time with Nanopore Sequencing M. D. Cao ... L. Coin Bioinformatics May 2016 R1, R2, R3
Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data G. Devailly, A. Mantsoki, A. Joshi Bioinformatics Apr 2016 R1
plasmidSPAdes: Assembling Plasmids from Whole Genome Sequencing Data D. Antipov ... P. Pevzner Bioinformatics Apr 2016 R1
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION sequencing M. D. Cao ... L. Coin Bioinformatics Apr 2016 R1
Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet C. Viner ... M. M. Hoffman Bioinformatics Mar 2016 R1
sCNAphase: using haplotype resolved read depth to genotype somatic copy number alterations from low cellularity aneuploid tumors W. Chen ... L. Coin Bioinformatics Feb 2016 R1, R2
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinIONTM sequencing M. D. Cao ... L. Coin Bioinformatics Dec 2015 R1, R2
D3M: Detection of differential distributions of methylation patterns Y. Matsui ... T. Shimamura Bioinformatics Aug 2015 R1
Tools and techniques for computational reproducibility S. R. Piccolo ... M. B. Frampton Bioinformatics Jul 2015 R1, R2
Real-time strain typing and analysis of antibiotic resistance potential using Nanopore MinION sequencing M. D. Cao ... L. Coin Bioinformatics May 2015 R1, R2, R3
Improving the Power of Structural Variation Detection by Augmenting the Reference J. Schroeder ... P. Medvedev Bioinformatics May 2015 R1
NxRepair: Error correction in de novo sequence assembly using Nextera mate pairs R. R. Murphy ... O. B. Schulz-Trieglaff Bioinformatics Dec 2014 R1
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM H. Li, Bioinformatics May 2013 R1