Open-content preprint peer review in Genomics

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Preprint Authors Area Date Reviews
Base-pair resolution detection of transcription factor binding site by deep deconvolutional network S. Salekin ... Y. Huang Genomics Jan 2018 R1
Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen L. Frantzeskakis ... R. Panstruga Genomics Jan 2018 R1
Minor allele frequency thresholds strongly affect population structure inference with genomic datasets E. B. Linck, C. J. Battey, Genomics Sep 2017 R1
Frequent lack of repressive capacity of promoter DNA methylation identified through genome-wide epigenomic manipulation E. E. Ford ... R. Lister Genomics Aug 2017 R1
Accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments V. Petukhov ... P. V. Kharchenko Genomics Aug 2017 R1
Bayesian Integrated Analysis Of Multiple Types Of Rare Variants To Infer Risk Genes For Schizophrenia And Other Neurodevelopmental Disorders H. T. Nguyen ... E. A. Stahl Genomics Jun 2017 R1
Indexcov: fast coverage quality control for whole-genome sequencing B. S. Pedersen ... A. R. Quinlan Genomics Jun 2017 R1
Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics and epigenetics data Q. H. Nguyen ... B. P. Dalrymple Genomics Jun 2017 R1, R2
The Core Transcriptome Of Mammalian Placentas And The Divergence Of Expression With Placental Shape D. L. Armstrong ... D. E. Wildman Genomics May 2017 R1
Universal Patterns Of Selection In Cancer And Somatic Tissues I. Martincorena ... P. J. Campbell Genomics Apr 2017 R1
Improved de novo Genome Assembly: Linked-Read Sequencing Combined with Optical Mapping Produce a High Quality Mammalian Genome at Relatively Low Cost D. W. Mohr ... A. F. Scott Genomics Apr 2017 R1
Pairwise comparisons are problematic when analyzing functional genomic data across species C. W. Dunn ... A. Hejnol Genomics Feb 2017 R1
A portable system for metagenomic analyses using nanopore-based sequencer and laptop computers can realize rapid on-site determination of bacterial compositions S. Mitsuhashi ... T. Imanishi Genomics Jan 2017 R1
A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types M. W. Libbrecht ... W. S. Noble Genomics Dec 2016 R1
Contrasting genome dynamics between domesticated and wild yeasts J. Yue ... G. Liti Genomics Sep 2016 R1
The Detailed 3D Multi-Loop Aggregate/Rosette Chromatin Architecture and Functional Dynamic Organization of the Human and Mouse Genomes T. A. Knoch ... F. G. Grosveld Genomics Aug 2016 R1
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data Y. Huang ... A. Siepel Genomics Aug 2016 R1
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome B. Simovski ... G. K. Sandve Genomics Aug 2016 R1, R2, R3, R4
The queenslandensis and the type form of the dengue fever mosquito (Aedes aegypti L.) are genomically indistinguishable G. Rašić ... A. A. Hoffmann Genomics Jul 2016 R1, R2, R3
The rate and effect of de novo mutations in natural populations of Arabidopsis thaliana M. Exposito-Alonso ... D. Weigel Genomics Apr 2016 R1
Lateral genetic transfers between eukaryotes and bacteriophages S. R. Bordenstein, S. R. Bordenstein, Genomics Apr 2016 R1
Bidirectional transcription marks accessible chromatin and is not specific to enhancers R. S. Young ... M. S. Taylor Genomics Apr 2016 R1
Many long intergenic non-coding RNAs distally regulate mRNA gene expression levels I. McDowell ... B. E. Engelhardt Genomics Mar 2016 R1, R2
Whole-genome characterization in pedigreed non-human primates using Genotyping-By-Sequencing and imputation. B. N. Bimber ... A. Vinson Genomics Mar 2016 R1
Accurate promoter and enhancer identification in 127 ENCODE and Roadmap Epigenomics cell types and tissues by GenoSTAN B. Zacher ... J. Gagneur Genomics Feb 2016 R1
A community overlap strategy reveals central genes and networks in heart failure P. Cordero ... E. A. Ashley Genomics Jan 2016 R1
INC-Seq: Accurate single molecule reads using nanopore sequencing C. Li ... N. Nagarajan Genomics Jan 2016 R1, R2
Disease variants alter transcription factor levels and methylation of their binding sites M. J. Bonder ... B. T. Heijmans Genomics Dec 2015 R1
Widespread shortening of 3' untranslated regions and increased exon inclusion characterize the human macrophage response to infection A. A. Pai ... L. B. Barreiro Genomics Sep 2015 R1
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data J. Risse ... M. Watson Genomics Aug 2015 R1, R2, R3
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer A. Quinlan ... N. Loman Genomics Sep 2014 R1, R2, R3