Burrows-Wheeler transform preprints

Subscribe to DISQUS thread to get updates on new preprints.

See other preprint channels in Computer Science.

Register as an editor for this theme. See keywords used to identify matching preprints


Preprint Authors Date Altmetric Reviews & Comments Actions
MSAC: Compression of multiple sequence alignment files S. Deorowicz, J. Walczyszyn, A. Debudaj-Grabysz Dec 2017 NA
Review Bookmark
Closing in on Time and Space Optimal Construction of Compressed Indexes. D. Kempa Dec 2017 2
Review Bookmark
Lyndon Array Construction during Burrows-Wheeler Inversion. F. A. Louza, G. M. . W. F. S. . G. P. Telles Oct 2017 1
Review Bookmark
String Attractors. N. Prezza Sep 2017 3
Review Bookmark
CHIC: a short read aligner for pan-genomic references D. Valenzuela, V. Mäkinen, Aug 2017 6
Review Bookmark
Efficient pattern matching in degenerate strings with the Burrows-Wheeler transform. J. W. Daykin...
B. W. L. Prieur-Gaston
Aug 2017 2
Review Bookmark
Fast Locating with the RLBWT. T. Gagie, N. P. . G. Navarro May 2017 2
Review Bookmark
Ultra-fast Identity by Descent Detection in Biobank-Scale Cohorts using Positional Burrows-Wheeler Transform A. Naseri...
D. Zhi
Jan 2017 20
Review Bookmark
Improved long read correction for de novo assembly using an FM-index J. M. Holt...
L. McMillan
Aug 2016 13
Review Bookmark
A natural encoding of genetic variation in a Burrows-Wheeler Transform to enable mapping and genome inference S. Maciuca...
Z. Iqbal
Jun 2016 51
Review Bookmark
Reference-based phasing using the Haplotype Reference Consortium panel P. Loh...
A. L. Price
May 2016 27
Comments
Review Bookmark
A Graph Extension of the Positional Burrows-Wheeler Transform and its Applications A. M. Novak, E. Garrison, B. Paten May 2016 35
Review Bookmark
Faster Average Case Low Memory Semi-External Construction of the Burrows-Wheeler Transform G. Tischler, Apr 2016 2
Review Bookmark
Fast haplotype matching in very large cohorts using the Li and Stephens model G. Lunter, Apr 2016 29
Comments
Review Bookmark
PALADIN:Protein Alignment for Functional Profiling Whole Metagenome Shotgun Data A. Westbrook...
M. MacManes
Apr 2016 17
Review Bookmark
Burrows-Wheeler transform for terabases J. Siré, n, Jan 2016 5
Review Bookmark
Efficient Privacy-Preserving String Search and an Application in Genomics K. Shimizu...
G. Rätsch
Nov 2015 27
Review Bookmark
MUSIC: A Hybrid Computing Environment for Burrows-Wheeler Alignment for Massive Amount of Short Read Sequence Data S. Gupta...
B. Panda
Feb 2014 5
Review Bookmark
Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform A. J. Cox...
G. Rosone
May 2012 10
Review Bookmark
On Bijective Variants of the Burrows-Wheeler Transform M. Kufleitner, Aug 2009 NA
Review Bookmark