Gene fusion preprints

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Preprint Authors Date Reviews & Comments Intersect Actions
Tumor Evolution Decoder (TED): Unveiling Tumor Evolution Based on Mutation Profiles of Subclones or Single Cells 11th May 2019
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Long read sequencing reveals a novel class of structural aberrations in cancers: identification and characterization of cancerous local amplifications 30th Apr 2019
lung_cancer Bookmark
Probability-based detection of phosphoproteomic uncertainty reveals rare signaling events driven by oncogenic kinase gene fusion 29th Apr 2019
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Functional linkage of gene fusions to cancer cell fitness assessed by pharmacological and CRISPR/Cas9 screening 26th Feb 2019
crispr rnaseq Bookmark
The role of transposable elements and DNA damage repair mechanisms in gene amplification and protein domain shuffling in plant genomes 17th Jan 2019
recombination Bookmark
Hi-C detects novel structural variants in HL-60 and HL-60/S4 cell lines Dec 2018
rnaseq Bookmark
Reticulate evolution in eukaryotes: origin and evolution of the nitrate assimilation pathway Oct 2018
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Rapid and highly-specific generation of targeted DNA sequencing libraries enabled by linking capture probes with universal primers Sep 2018
cell_free_dna Bookmark
FirstSV: Fast and Accurate Approach of Structural Variations Detection for Short DNA fragments Sep 2018
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Complementary information on single nucleotide variants, INDELs and functional translocations can be obtained with RNAseq using different library preparations R. Panero...
R. A. Calogero
Apr 2018
rnaseq Bookmark
DNAJB1-PRKACA fusion kinase drives tumorigenesis and interacts with {beta}-catenin and the liver regenerative response. E. R. Kastenhuber...
S. W. Lowe
Sep 2017
crispr Bookmark
DNAJB1-PRKACA fusion kinase drives tumorigenesis and interacts with β-catenin and the liver regenerative response. E. R. Kastenhuber...
S. W. Lowe
Sep 2017
crispr Bookmark
Pan-cancer study of heterogeneous RNA aberrations N. A. Fonseca...
P. Network
Sep 2017
rnaseq Bookmark
Precise, pan-cancer discovery of gene fusions reveals a signature of selection in primary tumors D. E. Freeman...
J. Salzman
Aug 2017
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Somatic genome editing with the RCAS/TVA-CRISPR/Cas9 system for precision tumor modeling B. Oldrini...
M. Squatrito
Aug 2017
crispr Bookmark
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line M. Nattestad...
M. C. Schatz
Aug 2017
rnaseq Bookmark
Computational proteogenomic identification and functional interpretation of translated fusions and micro structural variations in cancer Y. Lin...
S. C. Sahinalp
Jul 2017
rnaseq Bookmark
Fusion detection and quantification by pseudoalignment P. Melsted...
L. Pachter
Jul 2017
rnaseq Bookmark
RNA-mediated Genomic Arrangements in Mammalian Cells S. K. Gupta...
L. Yen
Jun 2017
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Comprehensive characterization of pediatric acute myeloid leukemia reveals novel molecular features and age-specific interactions H. Bolouri...
S. Meshinchi
Jun 2017
methylation rnaseq Bookmark