Genome assembly intersected with RNA-seq preprints

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Preprint Authors Date Reviews & Comments Intersect Actions
Draft Genome Assembly and Annotation of Red Raspberry Rubus Idaeus 13th Feb 2019
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Hybrid genome assembly and annotation of Danionella translucida, a transparent fish with the smallest known vertebrate brain 5th Feb 2019
nanopore Bookmark
A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth 24th Jan 2019
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Chromosome-level assembly of the common lizard (Zootoca vivipara) genome 16th Jan 2019
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BioSAILs: versatile workflow management for high-throughput data analysis 3rd Jan 2019
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FastqPuri: high-performance preprocessing of RNA-seq data Nov 2018
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Leveraging evolutionary relationships to improve Anopheles genome assemblies Oct 2018
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Discovery of Novel Conotoxin Candidates Using Machine Learning Sep 2018
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Homeolog expression quantification methods for allopolyploids Sep 2018
polyploid Bookmark
Trimitomics: An efficient pipeline for mitochondrial assembly from transcriptomic reads in non-model species Sep 2018
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Characterization of the Rosa roxbunghii Tratt transcriptome and analysis of MYB genes Aug 2018
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LOW-BIAS RNA SEQUENCING OF THE HIV-2 GENOME FROM BLOOD PLASMA K. L. James...
S. Rowland-Jones
May 2018
hiv Bookmark
Genome assembly and gene expression in the American black bear provides new insights into the renal response to hibernation. A. Srivastiva...
R. Korstanje
May 2018
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Embryonic gene transcription in the spiny mouse (Acomys cahirinus): a new model of embryonic genome activation. J. Mamrot...
H. Dickinson
Mar 2018
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Whole body transcriptomes and new insights into the biology of the tick Ixodes ricinus P. N. Charrier...
C. Rispe
Jan 2018
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Hercules: a profile HMM-based hybrid error correction algorithm for long reads C. Firtina...
A. E. Cicek
Dec 2017
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Whole genome hybrid assembly and protein-coding gene annotation of the entirely black native Korean chicken breed Yeonsan Ogye J. Sohn...
H. Chae
Nov 2017
ncrna Bookmark
A new standard for crustacean genomes: the highly contiguous, annotated genome assembly of the clam shrimp Eulimnadia texana reveals HOX gene order and identifies the sex chromosome J. G. Baldwin-Brown, S. C. Weeks, A. D. Long Nov 2017
recombination Bookmark
Draft genomes of the fungal pathogen Phellinus noxius in Hong Kong K. S. W. Tsang, R. Y. C. Lam, H. S. Kwan Oct 2017
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Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis T. Maeda...
M. Kawaguchi
Oct 2017
tandem_repeats Bookmark