Metagenomics intersected with Genome assembly preprints

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Preprint Authors Date Reviews & Comments Intersect Actions
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation 9th Dec 2018
antibiotic_resistance Bookmark
Ultra-deep, long-read nanopore sequencing of mock microbial community standards 6th Dec 2018
nanopore Bookmark
Choice of assembly software has a critical impact on virome characterisation 28th Nov 2018
Bookmark
Long read-based de novo assembly of low complex metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system 23rd Nov 2018
crispr methylation nanopore Bookmark
New approaches for assembly of short-read metagenomic data 10th Nov 2018
Bookmark
Exploring neighborhoods in large metagenome assembly graphs reveals hidden sequence diversity 6th Nov 2018
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deGSM: memory scalable construction of large scale de Bruijn Graph 11th Aug 2018
burrowswheeler_transform Bookmark
Bacterial and fungal contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing 9th Aug 2018
Bookmark
Strain-level overlap between infant and hospital fungal microbiomes revealed through de novo assembly of eukaryotic genomes from metagenomes M. R. Olm...
J. F. Banfield
17th May 2018
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Functional Analysis of Metagenomes by Likelihood Inference (FAMLI) Successfully Compensates for Multi-Mapping Short Reads from Metagenomic Samples J. L. Golob, S. S. Minot 5th Apr 2018
recombination Bookmark
Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes J. Alneberg...
J. Pinhassi
Nov 2017
Bookmark
MetaCompass: Reference-guided Assembly of Metagenomes V. Cepeda...
M. Pop
Nov 2017
Bookmark
Abundance-based reconstitution of microbial pan-genomes from whole-metagenome shotgun sequencing data F. P. OƱate...
M. Pichaud
Aug 2017
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Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants S. Awad...
C. T. Brown
Jun 2017
Bookmark
Gut Microbiota Composition Related With Clostridium difficile-Positive Diarrhea And C. Difficile Type (A+B+, A-B+, And A-B-) In ICU Hospitalized Patients A. Wu...
C. Li
Apr 2017
Bookmark
Faucet: streaming de novo assembly graph construction R. Rozov...
R. Shamir
Apr 2017
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De novo assembly of microbial genomes from human gut metagenomes using barcoded short read sequences E. Moss...
A. S. Bhatt
Apr 2017
antibiotic_resistance rnaseq Bookmark
GutCyc: a Multi-Study Collection of Human Gut Microbiome Metabolic Models A. S. Hahn...
S. J. Hallam
May 2016
metabolic_engineering Bookmark