Nanopore sequencing preprints

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Theme editors: Devika Ganesamoorthy , Lachlan Coin


Preprint Authors Date Reviews & Comments Intersect Actions
Shallow metagenomics with Nanopore sequencing in canine fecal microbiota improved bacterial taxonomy and identified an uncultured CrAssphage 22nd Mar 2019
genome_assembly metagenomics Bookmark
Mitigating Pandemic Risk with Influenza A Virus Field Surveillance at a Swine-Human Interface 22nd Mar 2019
Bookmark
Application of cell-free DNA sequencing in characterization of bloodborne microbes and the study of microbe-disease interactions 16th Mar 2019
cell_free_dna metagenomics Bookmark
A beneficial genomic rearrangement creates multiple versions of calcipressin in C. elegans 15th Mar 2019
Bookmark
First hybrid complete genome of Aeromonas veronii reveals chromosome-mediated novel structural variant mcr-3.19 from human clinical specimen 14th Mar 2019
antibiotic_resistance Bookmark
Nanopore sequencing of the pharmacogene CYP2D6 allows simultaneous haplotyping and detection of duplications 14th Mar 2019
Bookmark
Sequencing Complete Genomes of RNA Viruses With MinION Nanopore: Finding Associations Between Mutations 14th Mar 2019
rnaseq Bookmark
Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules 14th Mar 2019
rnaseq Bookmark
A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes 13th Mar 2019
rnaseq Bookmark
Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli 8th Mar 2019
antibiotic_resistance Bookmark
Comparison of single nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga Toxin Producing Escherichia coli. 7th Mar 2019
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A Multiplex Pharmacogenetics Assay using the MinION Nanopore Sequencing Device 6th Mar 2019
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Nanopore sequencing of full-length circRNAs in human and mouse brains reveals circRNA-specific exon usage and intron retention 6th Mar 2019
ncrna Bookmark
Genomic investigation reveals contaminated detergent as the source of an ESBL-producing Klebsiella michiganensis outbreak in a neonatal unit 6th Mar 2019
antibiotic_resistance Bookmark
Longshot: accurate variant calling in diploid genomes using single-molecule long read sequencing 6th Mar 2019
Bookmark
Title - Taxonomic survey of Anadenobolus monilicornis gut microbiota via shotgun nanopore sequencing 1st Mar 2019
metagenomics Bookmark
Pooled CRISPR Inverse PCR sequencing (PCIP-seq): simultaneous sequencing of retroviral insertion points and the associated provirus in thousands of cells with long reads 25th Feb 2019
crispr hiv recombination Bookmark
Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology 23rd Feb 2019
antibiotic_resistance genome_assembly Bookmark
ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning 19th Feb 2019
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SquiggleKit: A toolkit for manipulating nanopore signal data 18th Feb 2019
Bookmark