RNA-seq preprints

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Preprint Authors Date Altmetric Reviews & Comments Actions
Hierarchical clustering of DNA k-mer counts in RNA-seq fastq files reveals batch effects. W. Kaisers, H. S. . H. Schwender 24th Jul 2017 11
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beachmat: a Bioconductor C++ API for accessing single-cell genomics data from a variety of R matrix types A. T. L. Lun...
M. L. Smith
24th Jul 2017 6
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Towards a highly efficient diversity census of the prokaryotic biosphere: a group testing approach B. Shalem...
N. Shental
23rd Jul 2017 3
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TruePaiR: Software for the Accurate Identification of Complementary piRNA Read Pairs in High-Throughput Sequencing Data P. A. Schreiner, P. W. Atkinson, 23rd Jul 2017 5
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Modest static pressure suppresses columnar epithelial cell proliferation in association with cell shape and cytoskeletal modifications M. Hagiyama...
A. Ito
22nd Jul 2017 1
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Hierarchical Analysis of Multi-mapping RNA-Seq Reads Improves the Accuracy of Allele-specific Expression N. Raghupathy...
G. A. Churchill
22nd Jul 2017 24
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Developmental transcriptomics of the brittle star Amphiura filiformis reveals gene regulatory network rewiring in echinoderm larval skeleton evolution D. V. Dylus...
P. Oliveri
21st Jul 2017 7
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Metagenomic sequencing suggests arthropod antiviral RNA interference is highly derived, and identifies novel viral small RNAs in a mollusc and a brown alga F. M. Waldron...
D. J. Obbard
21st Jul 2017 9
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Large scale and significant expression from pseudogenes in Sodalis glossinidius - a facultative bacterial endosymbiont I. Goodhead...
A. C. Darby
21st Jul 2017 14
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Differential epigenetic landscapes and transcription factors explain X-linked gene behaviours during X-chromosome reactivation in the mouse inner cell mass M. Borensztein...
E. Heard
21st Jul 2017 6
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Varying-Censoring Aware Matrix Factorization for Single Cell RNA-Sequencing F. W. Townes...
R. A. Irizarry
21st Jul 2017 95
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Genome expansion and lineage-specific genetic innovations in the world9s largest organisms (Armillaria) G. Sipos...
L. G. Nagy
20th Jul 2017 1
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Genome-wide strategies identify molecular niches regulated by connective tissue-associated transcription factors M. Orgeur...
S. Stricker
20th Jul 2017 4
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Fusion detection and quantification by pseudoalignment P. Melsted...
L. Pachter
20th Jul 2017 26
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SnakeChunks: modular blocks to build Snakemake workflows for reproducible NGS analyses C. Rioualen...
J. v. Helden
19th Jul 2017 43
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Single-Cell RNAseq analysis of infiltrating neoplastic cells at the migrating front of human glioblastoma S. Darmanis...
S. R. Quake
19th Jul 2017 21
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Systematic selection of reference genes for normalization of circulating RNA transcripts in pregnant women based on RNA-seq data S. S. Chim...
T. Leung
19th Jul 2017 4
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Integrated analysis of single cell transcriptomic data across conditions, technologies, and species A. Butler, R. Satija, 18th Jul 2017 84
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Correcting batch effects in single-cell RNA sequencing data by matching mutual nearest neighbours. L. Haghverdi...
J. C. Marioni
18th Jul 2017 36
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Bayesian Unidimensional Scaling for visualizing uncertainty in high dimensional datasets with latent ordering of observations L. H. Nguyen, S. Holmes, 18th Jul 2017 12
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